Documentation Index
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🚧 Work in progress: these docs are still being polished and may change.

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Language

Introduction
Installation
Quickstart

Language Concepts

Architecture Overview
Sequences
Segments
Constructs
Generators
Constraints
Optimizers
Programs
Tools

Language Guides

Using Constraints
Using Generators
Using Optimizers

Constraints

Generators

- LigandMPNN Inverse Folding
- ProteinMPNN Inverse Folding

Optimizers

Beam Search Optimizer
Cycling Optimizer
Gradient Optimizer
MCMC Optimizer
Rejection Sampling Optimizer

Inverse Folding

Inverse Folding

Inverse-folding generators design a sequence for a fixed three-dimensional backbone.

Inverse-folding generators design a sequence for a fixed three-dimensional backbone.

ProGen2 Protein Language Model

LigandMPNN Inverse Folding

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